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1

Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus

Cha, Jeeyeon, Burnum-Johnson, Kristin E., Bartos, Amanda, Li, Yingju, Baker, Erin S., Tilton, Susan C., Webb-Robertson, Bobbie-Jo M., Piehowski, Paul D., Monroe, Matthew E., Jegga, Anil G., Murata, Sh

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 5.43 MB

english, 2015

2

[IEEE 2013 IEEE International Conference on Technologies for Homeland Security (HST) - Waltham, MA, USA (2013.11.12-2013.11.14)] 2013 IEEE International Conference on Technologies for Homeland Security (HST) - Assessing performance and tradeoffs of bioforensic signature systems

Watkins, Daniel M., Sego, Landon H., Holmes, Aimee E., Webb-Robertson, Bobbie-Jo M., Whiten, Amanda M., Wunschen, David S., Kreuzer, Helen W., Corley, Courtney D., Tardiff, Mark F.

Year:

2013

Language:

english

File:

PDF, 396 KB

english, 2013

3

Temporal profiles of plasma proteome during childhood development

Liu, Chih-Wei, Bramer, Lisa, Webb-Robertson, Bobbie-Jo, Waugh, Kathleen, Rewers, Marian J., Zhang, Qibin

Journal:

Journal of Proteomics

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

4

Silymarin Suppresses Cellular Inflammation By Inducing Reparative Stress Signaling

Lovelace, Erica S., Wagoner, Jessica, MacDonald, James, Bammler, Theo, Bruckner, Jacob, Brownell, Jessica, Beyer, Richard P., Zink, Erika M., Kim, Young-Mo, Kyle, Jennifer E., Webb-Robertson, Bobbie-J

Journal:

Journal of Natural Products

Year:

2015

Language:

english

File:

PDF, 3.05 MB

english, 2015

5

Computational methods for mass spectrometry proteomics

B. Webb-Robertson

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2008

Language:

english

File:

PDF, 33 KB

english, 2008

6

Spectral signatures for the classification of microbial species using Raman spectra

Webb-Robertson, Bobbie-Jo M., Bailey, Vanessa L., Fansler, Sarah J., Wilkins, Michael J., Hess, Nancy J.

Journal:

Analytical and Bioanalytical Chemistry

Year:

2012

Language:

english

File:

PDF, 610 KB

english, 2012

7

Changes in Placental Lipidomics with Obesity and Gestational Diabetes: Sexual Dimorphism

Myatt, Leslie, Wang, Eric, Stratton, Kelly, Bramer, Lisa, Webb-Robertson, Bobbie-Jo, Kyle, Jennifer, Burnum-Johnson, Kristin

Journal:

Year:

2019

File:

PDF, 67 KB

2019

8

Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms

Anuj R. Shah, Christopher S. Oehmen, Jill Harper, Bobbie-Jo M. Webb-Robertson

Journal:

Computational Biology and Chemistry

Year:

2007

Language:

english

File:

PDF, 279 KB

english, 2007

9

SVM-BALSA: Remote homology detection based on Bayesian sequence alignment

Bobbie-Jo Webb-Robertson, Christopher Oehmen, Melissa Matzke

Journal:

Computational Biology and Chemistry

Year:

2005

Language:

english

File:

PDF, 118 KB

english, 2005

10

Physicochemical property distributions for accurate and rapid pairwise protein homology detection

Bobbie-Jo M Webb-Robertson, Kyle G Ratuiste, Christopher S Oehmen

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.89 MB

english, 2010

11

Smoking, COPD, and 3-Nitrotyrosine Levels of Plasma Proteins

Jin, Hongjun, Webb-Robertson, Bobbie-Jo, Peterson, Elena S., Tan, Ruimin, Bigelow, Diana J., Scholand, Mary Beth, Hoidal, John R., Pounds, Joel G., Zangar, Richard C.

Journal:

Environmental Health Perspectives

Year:

2011

Language:

english

File:

PDF, 447 KB

english, 2011

12

A Study of spectral integration and normalization in NMR-based metabonomic analyses

Bobbie-Jo M. Webb-Robertson, David F. Lowry, Kristin H. Jarman, Sam J. Harbo, Q. Ryan Meng, Alfred F. Fuciarelli, Joel G. Pounds, K. Monica Lee

Journal:

Journal of Pharmaceutical and Biomedical Analysis

Year:

2005

Language:

english

File:

PDF, 268 KB

english, 2005

13

Comparison of Probability and Likelihood Models for Peptide Identification from Tandem Mass Spectrometry Data

Cannon, William R., Jarman, Kristin H., Webb-Robertson, Bobbie-Jo M., Baxter, Douglas J., Oehmen, Christopher S., Jarman, Kenneth D., Heredia-Langner, Alejandro, Auberry, Kenneth J., Anderson, Gordon

Journal:

Journal of Proteome Research

Year:

2005

Language:

english

File:

PDF, 368 KB

english, 2005

14

P-Mart – Interactive Analysis of Ion Abundance Global Proteomics Data

Bramer, Lisa M., Stratton, Kelly G., White, Amanda M, Bleeker, Amelia H, Kobold, Markus A, Waters, Katrina M., Metz, Thomas O., Rodland, Karin D, Webb-Robertson, Bobbie-Jo M.

Journal:

Journal of Proteome Research

Year:

2019

File:

PDF, 1.39 MB

2019

15

An improved optimization algorithm and a Bayes factor termination criterion for sequential projection pursuit

Bobbie-Jo M. Webb-Robertson, Kristin H. Jarman, Scott D. Harvey, Christian Posse, Bob W. Wright

Journal:

Chemometrics and Intelligent Laboratory Systems

Year:

2005

Language:

english

File:

PDF, 857 KB

english, 2005

16

Evaluation of sampling tools for environmental sampling of bacterial endospores from porous and nonporous surfaces

N.B. Valentine, M.G. Butcher, Y.-F. Su, K.H. Jarman, M. Matzke, B.-J. Webb-Robertson, E.A. Panisko, B.A.B. Seiders, K.L. Wahl

Journal:

Journal of Applied Microbiology

Year:

2008

Language:

english

File:

PDF, 141 KB

english, 2008

17

Sequential projection pursuit principal component analysis – dealing with missing data associated with new -omics technologies

Webb-Robertson, Bobbie-Jo, Matzke, Melissa, Metz, Thomas, McDermott, Jason, Walker, Hyunjoo, Rodland, Karin, Pounds, Joel, Waters, Katrina

Journal:

Year:

2013

Language:

english

File:

PDF, 5.41 MB

english, 2013

18

[IEEE 2016 International Conference on Computational Science and Computational Intelligence (CSCI) - Las Vegas, NV, USA (2016.12.15-2016.12.17)] 2016 International Conference on Computational Science and Computational Intelligence (CSCI) - ROFI - The Use of Repeated Optimization for Feature Interpretation

Webb-Robertson, Bobbie-Jo M., Bramer, Lisa M., Reehl, Sarah M., Metz, Thomas O., Zhang, Qibin, Rewers, Marian J., Frohnert, Brigitte I.

Year:

2016

Language:

english

File:

PDF, 480 KB

english, 2016

19

A feature vector integration approach for a generalized support vector machine pairwise homology algorithm

Bobbie-Jo M. Webb-Robertson, Christopher S. Oehmen, Anuj R. Shah

Journal:

Computational Biology and Chemistry

Year:

2008

Language:

english

File:

PDF, 352 KB

english, 2008

20

Mechanisms of Severe Acute Respiratory Syndrome Coronavirus-Induced Acute Lung Injury

Gralinski, L. E., Bankhead, A., Jeng, S., Menachery, V. D., Proll, S., Belisle, S. E., Matzke, M., Webb-Robertson, B.-J. M., Luna, M. L., Shukla, A. K., Ferris, M. T., Bolles, M., Chang, J., Aicher, L

Journal:

Year:

2013

Language:

english

File:

PDF, 2.29 MB

english, 2013

21

Quantitative Differences in the Urinary Proteome of Siblings Discordant for Type 1 Diabetes Include Lysosomal Enzymes

Suh, Moo-Jin, Tovchigrechko, Andrey, Thovarai, Vishal, Rolfe, Melanie A., Torralba, Manolito G., Wang, Junmin, Adkins, Joshua N., Webb-Robertson, Bobbie-Jo M., Osborne, Whitney, Cogen, Fran R., Kaplow

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

22

Assessment of the Utility of the Oral Fluid and Plasma Proteomes for Hydrocodone Exposure

Deatherage Kaiser, Brooke L., Jacobs, Jon M., Schepmoes, Athena A., Brewer, Heather M., Webb-Robertson, Bobbie-Jo M., Valtier, Sandra, Bebarta, Vikhyat S., Adkins, Joshua N.

Journal:

Journal of Medical Toxicology

Year:

2019

Language:

english

File:

PDF, 1.01 MB

english, 2019

23

Combined Statistical Analyses of Peptide Intensities and Peptide Occurrences Improves Identification of Significant Peptides from MS-Based Proteomics Data

Webb-Robertson, Bobbie-Jo M., McCue, Lee Ann, Waters, Katrina M., Matzke, Melissa M., Jacobs, Jon M., Metz, Thomas O., Varnum, Susan M., Pounds, Joel G.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.68 MB

english, 2010

24

[IEEE 2013 IEEE International Conference on Intelligence and Security Informatics (ISI) - Seattle, WA, USA (2013.06.4-2013.06.7)] 2013 IEEE International Conference on Intelligence and Security Informatics - Assessing the quality of bioforensic signatures

Sego, Landon H., Holmes, Aimee E., Gosink, Luke J., Webb-Robertson, Bobbie-Jo M., Kreuzer, Helen W., Anderson, Richard M., Brothers, Alan J., Corley, Courtney D., Tardiff, Mark R.

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

25

Information-Based Development of New Radiation Detection Materials

Ferris, Kim, webb-robertson, bobbie-jo m, jones, dumont m

Journal:

MRS Proceedings

Year:

2005

Language:

english

File:

PDF, 273 KB

english, 2005

26

Measuring Global Credibility with Application to Local Sequence Alignment

Webb-Robertson, Bobbie-Jo M., McCue, Lee Ann, Lawrence, Charles E., Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 482 KB

english, 2008

27

Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network

Webb-Robertson, Bobbie-Jo M., Stratton, Kelly G., Kyle, Jennifer E., Kim, Young-Mo, Bramer, Lisa M., Waters, Katrina M., Koeller, David M., Metz, Thomas O.

Journal:

Analytical Chemistry

Year:

2019

File:

PDF, 2.21 MB

2019

28

Impaired Transcriptional Response of the Murine Heart to Cigarette Smoke in the Setting of High Fat Diet and Obesity

Tilton, Susan C., Karin, Norman J., Webb-Robertson, Bobbie-Jo M., Waters, Katrina M., Mikheev, Vladimir, Lee, K. Monica, Corley, Richard A., Pounds, Joel G., Bigelow, Diana J.

Journal:

Chemical Research in Toxicology

Year:

2013

Language:

english

File:

PDF, 655 KB

english, 2013

29

Proteomic Analysis of Bronchoalveolar Lavage Fluid Proteins from Mice Infected with Francisella tularensis ssp. novicida

Varnum, Susan M., Webb-Robertson, Bobbie-Jo M., Pounds, Joel G., Moore, Ronald J., Smith, Richard D., Frevert, Charles W., Skerrett, Shawn J., Wunschel, David

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.86 MB

english, 2012

30

The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation

Huang, Eric L., Aylward, Frank O., Kim, Young-Mo, Webb-Robertson, Bobbie-Jo M., Nicora, Carrie D., Hu, Zeping, Metz, Thomas O., Lipton, Mary S., Smith, Richard D., Currie, Cameron R., Burnum-Johnson,

Journal:

Environmental Microbiology Reports

Year:

2014

Language:

english

File:

PDF, 226 KB

english, 2014

31

Comparative Proteomics and Pulmonary Toxicity of Instilled Single-Walled Carbon Nanotubes, Crocidolite Asbestos, and Ultrafine Carbon Black in Mice

Teeguarden, J. G., Webb-Robertson, B.-J., Waters, K. M., Murray, A. R., Kisin, E. R., Varnum, S. M., Jacobs, J. M., Pounds, J. G., Zanger, R. C., Shvedova, A. A.

Journal:

Toxicological Sciences

Year:

2011

Language:

english

File:

PDF, 803 KB

english, 2011

32

Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements

Webb-Robertson, B.-J. M., Matzke, M. M., Datta, S., Payne, S. H., Kang, J., Bramer, L. M., Nicora, C. D., Shukla, A. K., Metz, T. O., Rodland, K. D., Smith, R. D., Tardiff, M. F., McDermott, J. E., Po

Journal:

Molecular & Cellular Proteomics

Year:

2014

Language:

english

File:

PDF, 641 KB

english, 2014

33

SPIE Proceedings [SPIE Electronic Imaging 2006 - San Jose, CA (Sunday 15 January 2006)] Visualization and Data Analysis 2006 - Diverse information integration and visualization

Havre, Susan L., Shah, Anuj, Posse, Christian, Webb-Robertson, Bobbie-Jo, Erbacher, Robert F., Roberts, Jonathan C., Gröhn, Matti T., Börner, Katy

Year:

2006

Language:

english

File:

PDF, 983 KB

english, 2006

34

Phospholipid fatty acid biomarkers in a freshwater periphyton community exposed to uranium: discovery by non-linear statistical learning

Bobbie-Jo Webb-Robertson, Amoret L. Bunn, Vanessa L. Bailey

Journal:

Journal of Environmental Radioactivity

Year:

2011

Language:

english

File:

PDF, 482 KB

english, 2011

35

Challenges in biomarker discovery: combining expert insights with statistical analysis of complex omics data

McDermott, Jason E, Wang, Jing, Mitchell, Hugh, Webb-Robertson, Bobbie-Jo, Hafen, Ryan, Ramey, John, Rodland, Karin D

Journal:

Expert Opinion on Medical Diagnostics

Year:

2013

Language:

english

File:

PDF, 481 KB

english, 2013

36

High and Low Doses of Ionizing Radiation Induce Different Secretome Profiles in a Human Skin Model

Zhang, Qibin, Matzke, Melissa, Schepmoes, Athena A., Moore, Ronald J., Webb-Robertson, Bobbie-Jo, Hu, Zeping, Monroe, Matthew E., Qian, Wei-Jun, Smith, Richard D., Morgan, William F., Woloschak, Gayle

Journal:

Year:

2014

Language:

english

File:

PDF, 424 KB

english, 2014

37

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

Webb-Robertson, B.-J. M., Cannon, W. R., Oehmen, C. S., Shah, A. R., Gurumoorthi, V., Lipton, M. S., Waters, K. M.

Journal:

Year:

2010

Language:

english

File:

PDF, 284 KB

english, 2010

38

Serum Proteome Profiles in Stricturing Crohnʼs Disease

Townsend, Peter, Zhang, Qibin, Shapiro, Jason, Webb-Robertson, Bobbie-Jo, Bramer, Lisa, Schepmoes, Athena A., Weitz, Karl K., Mallette, Meaghan, Moniz, Heather, Bright, Renee, Merrick, Marjorie, Shah,

Journal:

Inflammatory Bowel Diseases

Year:

2015

Language:

english

File:

PDF, 665 KB

english, 2015

39

SPIE Proceedings [SPIE Boulder Damage Symposium XXXVIII: Annual Symposium on Optical Materials for High Power Lasers - Boulder, CO (Monday 25 September 2006)] Laser-Induced Damage in Optical Materials: 2006 - Materials discovery: informatic strategies for optical materials

Ferris, Kim F., Exarhos, Gregory J., Guenther, Arthur H., Webb-Robertson, Bobbie-Jo M., Jones, Dumont M., Lewis, Keith L., Ristau, Detlev, Soileau, M. J., Stolz, Christopher J.

Year:

2006

Language:

english

File:

PDF, 211 KB

english, 2006

40

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (5 – 9 January 2009)] Biocomputing 2009 - A BAYESIAN INTEGRATION MODEL OF HIGH-THROUGHPUT PROTEOMICS AND METABOLOMICS DATA FOR IMPROVED EARLY DETECTION OF MICROBIAL INFECTIONS

WEBB-ROBERTSON, BOBBIE-JO M., MCCUE, LEE ANN, BEAGLEY, NATHANIAL, MCDERMOTT, JASON E., WUNSCHEL, DAVID S., VARNUM, SUSAN M., HU, JIAN ZHI, ISERN, NANCY G., BUCHKO, GARRY W., MCATEER, KATHLEEN, POUNDS,

Language:

english

File:

PDF, 2.04 MB

english

41

Enabling proteomics discovery through visual analysis

Havre, S.L., Singhal, M., Payne, D.A., Weir Lipton, M.S., Webb-Robertson, B.-J.M.

Journal:

IEEE Engineering in Medicine and Biology Magazine

Year:

2005

Language:

english

File:

PDF, 2.27 MB

english, 2005

42

A Semiautomated Framework for Integrating Expert Knowledge into Disease Marker Identification

Wang, Jing, Webb-Robertson, Bobbie-Jo M., Matzke, Melissa M., Varnum, Susan M., Brown, Joseph N., Riensche, Roderick M., Adkins, Joshua N., Jacobs, Jon M., Hoidal, John R., Scholand, Mary Beth, Pounds

Journal:

Disease Markers

Year:

2013

Language:

english

File:

PDF, 324 KB

english, 2013

43

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Maui, Hawaii (3 – 7 January 2006)] Biocomputing 2006 - THE CHALLENGE OF PROTEOMIC DATA, FROM MOLECULAR SIGNALS TO BIOLOGICAL NETWORKS AND DISEASE: SESSION INTRODUCTION

WEBB-ROBERTSON, BOBBIE-JO, CANNON, WILLIAM, ADKINS, JOSHUA, GRACIO, DEBORAH

Language:

english

File:

PDF, 501 KB

english

44

A global survey of ATPase activity in Plasmodium falciparum asexual blood stages and gametocytes

Ortega, Corrie, Frando, Andrew, Webb-Robertson, Bobbie-Jo, Anderson, Lindsey N, Fleck, Neil D, Flannery, Erika L, Fishbaugher, Matthew, Murphree, Taylor A, Hansen, Joshua R, Smith, Richard D., Kappe,

Journal:

Molecular & Cellular Proteomics

Year:

2017

Language:

english

File:

PDF, 1.15 MB

english, 2017

45

VIBE 2.0: Visual Integration for Bayesian Evaluation

Beagley, N., Stratton, K. G., Webb-Robertson, B.-J. M.

Journal:

Year:

2010

Language:

english

File:

PDF, 216 KB

english, 2010

46

Review, Evaluation, and Discussion of the Challenges of Missing Value Imputation for Mass Spectrometry-Based Label-Free Global Proteomics

Webb-Robertson, Bobbie-Jo M., Wiberg, Holli K., Matzke, Melissa M., Brown, Joseph N., Wang, Jing, McDermott, Jason E., Smith, Richard D., Rodland, Karin D., Metz, Thomas O., Pounds, Joel G., Waters, K

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

47

Bayesian Integration of Isotope Ratio for Geographic Sourcing of Castor Beans

Webb-Robertson, Bobbie-Jo, Kreuzer, Helen, Hart, Garret, Ehleringer, James, West, Jason, Gill, Gary, Duckworth, Douglas

Journal:

Journal of Biomedicine and Biotechnology

Year:

2012

Language:

english

File:

PDF, 453 KB

english, 2012

48

Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus–mediated liver disease posttransplantation

Deborah L. Diamond, Alexei L. Krasnoselsky, Kristin E. Burnum, Matthew E. Monroe, Bobbie-Jo Webb-Robertson, Jason E. McDermott, Matthew M. Yeh, Jose Felipe Golib Dzib, Nathan Susnow, Susan Strom, Sean

Journal:

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

49

The Effects of Low-Dose Irradiation on Inflammatory Response Proteins in a 3D Reconstituted Human Skin Tissue Model

Varnum, Susan M., Springer, David L., Chaffee, Mary E., Lien, Katie A., Webb-Robertson, Bobbie-Jo M., Waters, Katrina M., Sacksteder, Colette A.

Journal:

Radiation Research

Year:

2012

Language:

english

File:

PDF, 540 KB

english, 2012

50

Predictive Modeling of Type 1 Diabetes Stages Using Disparate Data Sources

Frohnert, Brigitte I., Webb-Robertson, Bobbie-Jo, Bramer, Lisa M., Reehl, Sara M., Waugh, Kathy, Steck, Andrea K., Norris, Jill M., Rewers, Marian

Journal:

Year:

2019

Language:

english

File:

PDF, 1.89 MB

english, 2019

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